Currently, Pan-Atlantic University has four main teaching and research units:
- Lagos Business School (LBS). It started in 1991.
- Enterprise Development Centre (EDC). It started in 2003.
- School of Media and Communication (SMC). It started in 2008
- School of Management and Social Sciences (SMSS). It started in 2014
- Yemisi Shyllon Museum of Art (YSMA). It started in 2019
- School of Science and Technology (SST). It started in 2020